JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KCTD5_chr16_2677523_2714030	0/0	c0007	705	1	0	0	0	1	0	copy fasta	KCTD5	chr16	2677523	2714030
KCTD6_chr3_58487096_58507356	1/1	c0001	714	403	98	71	176	12	44	copy fasta	KCTD6	chr3	58487096	58507356
KCTD6_chr3_58487096_58507356	0/0	c0002	714	1	0	1	0	0	0	copy fasta	KCTD6	chr3	58487096	58507356
KCTD7_chr7_66623881_66648047	1/1	c0001	870	340	82	65	138	14	39	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	c0002	870	60	1	11	43	2	3	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	c0003	870	27	0	2	25	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD7_chr7_66623881_66648047	0/0	c0004	870	1	1	0	0	0	0	copy fasta	KCTD7	chr7	66623881	66648047
KCTD8_chr4_44168903_44453809	0/0	c0001	1422	265	66	51	115	12	21	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0002	1422	8	0	3	0	0	5	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0003	1425	8	8	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0004	1422	5	0	0	5	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0005	1422	4	4	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0006	1422	1	0	0	1	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0007	1422	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0008	1422	1	1	0	0	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD8_chr4_44168903_44453809	0/0	c0009	1422	1	0	0	1	0	0	copy fasta	KCTD8	chr4	44168903	44453809
KCTD9_chr8_25422847_25463433	1/1	c0001	1170	283	78	42	124	10	27	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	c0002	1170	62	3	18	32	4	5	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	c0003	1170	4	4	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KCTD9_chr8_25422847_25463433	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	KCTD9	chr8	25422847	25463433
KDELR1_chr19_48377575_48396551	1/1	c0001	639	429	94	78	193	16	46	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	c0002	639	1	0	0	1	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	c0003	639	1	1	0	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR1_chr19_48377575_48396551	0/0	c0004	639	1	1	0	0	0	0	copy fasta	KDELR1	chr19	48377575	48396551
KDELR2_chr7_6456089_6489152	0/1	c0001	639	327	94	64	122	14	32	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	1/0	c0002	639	92	2	10	63	2	14	copy fasta	KDELR2	chr7	6456089	6489152
KDELR2_chr7_6456089_6489152	0/0	c0003	639	1	0	0	1	0	0	copy fasta	KDELR2	chr7	6456089	6489152
KDELR3_chr22_38463096_38488447	1/0	c0001	645	282	71	59	114	9	28	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/1	c0002	645	120	19	11	72	3	14	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	c0003	645	1	0	0	0	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDELR3_chr22_38463096_38488447	0/0	c0004	645	1	0	0	0	0	1	copy fasta	KDELR3	chr22	38463096	38488447
KDF1_chr1_26944562_26965468	1/0	c0001	1197	197	58	34	74	6	24	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0002	1197	23	0	4	6	2	11	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0003	1197	14	6	3	0	4	1	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0004	1197	13	0	0	13	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0005	1197	10	8	2	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0006	1197	8	7	1	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/1	c0007	1197	5	0	1	0	1	2	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0008	1197	2	0	2	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0010	1197	1	0	1	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0012	1197	1	0	0	0	1	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0013	1197	1	1	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDF1_chr1_26944562_26965468	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	KDF1	chr1	26944562	26965468
KDM1A_chr1_23014468_23088689	1/0	c0001	2631	309	67	57	144	10	30	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0002	2631	20	17	3	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0003	2631	14	0	0	14	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0004	2631	3	3	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/1	c0005	2631	1	0	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689