JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM1A_chr1_23014468_23088689	0/0	c0006	2631	1	1	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0007	2631	1	1	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0008	2631	1	1	0	0	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0009	2631	1	0	0	1	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1A_chr1_23014468_23088689	0/0	c0010	2631	1	0	0	1	0	0	copy fasta	KDM1A	chr1	23014468	23088689
KDM1B_chr6_18150422_18228854	0/0	c0001	2469	115	41	16	47	0	11	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/1	c0002	2469	98	7	10	68	5	7	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0003	2469	90	20	13	44	1	12	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0004	2469	23	17	3	0	2	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0005	2469	17	3	8	0	2	4	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0006	2469	13	2	8	2	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0007	2469	6	3	1	0	2	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0008	2469	5	0	2	2	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0009	2469	4	0	2	0	0	2	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0010	2469	4	3	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0011	2469	2	1	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0012	2469	2	0	2	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0013	2469	2	1	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0014	2469	2	0	0	2	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0015	2469	1	0	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0016	2469	1	0	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0017	2469	1	0	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0018	2469	1	0	0	1	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0019	2469	1	0	0	0	1	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0020	2469	1	0	0	0	1	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0021	2469	1	0	0	0	0	1	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	0/0	c0022	2469	1	0	1	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM1B_chr6_18150422_18228854	1/0	c0023	2469	1	0	0	0	0	0	copy fasta	KDM1B	chr6	18150422	18228854
KDM2A_chr11_67114263_67263082	0/1	c0001	3489	183	65	44	68	1	4	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	1/0	c0002	3489	22	8	3	9	1	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	c0003	3489	12	11	1	0	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	c0004	3489	1	0	0	1	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	c0005	3489	1	0	0	1	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2A_chr11_67114263_67263082	0/0	c0006	3489	1	0	0	1	0	0	copy fasta	KDM2A	chr11	67114263	67263082
KDM2B_chr12_121424096_121586023	1/1	c0001	4011	169	56	31	53	6	21	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0002	4011	54	3	12	28	4	7	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0003	4011	15	14	1	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0004	4011	10	10	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0005	4011	5	5	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0006	4011	5	0	0	4	0	1	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0007	4011	3	0	0	1	0	2	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0008	4011	1	1	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0009	3992	1	0	1	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0010	4011	1	1	0	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0011	4011	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0012	4011	1	0	0	0	0	1	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0013	4011	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0014	4011	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0015	4011	1	0	0	1	0	0	copy fasta	KDM2B	chr12	121424096	121586023
KDM2B_chr12_121424096_121586023	0/0	c0016	4011	1	0	1	0	0	0	copy fasta	KDM2B	chr12	121424096	121586023