JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM3A_chr2_86436371_86497716	0/0	c0001	3966	189	57	37	75	7	13	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	1/1	c0002	3966	55	8	20	8	5	12	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0003	3966	15	1	2	10	2	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0004	3966	12	8	3	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0005	3966	6	6	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0006	3966	4	4	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0007	3966	3	2	1	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0008	3966	3	2	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0009	3966	2	0	0	2	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0010	3966	2	2	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0011	3966	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0012	3966	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0013	3966	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0014	3966	1	0	1	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0015	3966	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0016	3966	1	0	0	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0017	3966	1	0	0	0	0	1	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0018	3966	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0019	3966	1	1	0	0	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0020	3966	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3A_chr2_86436371_86497716	0/0	c0021	3966	1	0	0	1	0	0	copy fasta	KDM3A	chr2	86436371	86497716
KDM3B_chr5_138347685_138442027	0/0	c0001	5286	121	32	12	64	3	10	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/1	c0002	5286	117	6	33	56	6	15	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0003	5286	69	19	19	22	5	4	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0004	5286	11	0	2	5	1	3	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	1/0	c0005	5286	7	6	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0006	5286	6	0	2	0	0	4	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0007	5286	5	4	1	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0008	5286	2	2	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0009	5286	2	2	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0010	5286	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0011	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0012	5286	1	0	0	0	1	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0013	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0014	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0015	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0016	5286	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0017	5286	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0018	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0019	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0020	5286	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0021	5286	1	0	1	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0022	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0023	5286	1	1	0	0	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0024	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM3B_chr5_138347685_138442027	0/0	c0025	5286	1	0	0	1	0	0	copy fasta	KDM3B	chr5	138347685	138442027
KDM4A_chr1_43645149_43710518	0/1	c0001	3195	251	74	32	112	8	24	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	1/0	c0002	3195	95	6	21	47	4	16	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0003	3195	7	0	0	7	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0004	3195	6	6	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518