JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM4A_chr1_43645149_43710518	0/0	c0005	3195	6	6	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0006	3195	1	1	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0007	3195	1	0	0	1	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0008	3195	1	0	1	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0009	3195	1	0	0	1	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4A_chr1_43645149_43710518	0/0	c0010	3195	1	1	0	0	0	0	copy fasta	KDM4A	chr1	43645149	43710518
KDM4B_chr19_4964113_5158598	0/0	c0001	3366	120	32	36	29	3	20	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0002	3291	38	15	7	4	1	11	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	1/0	c0003	3291	27	0	9	14	2	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/1	c0004	3516	9	0	2	0	2	4	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0005	3291	8	5	0	3	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0006	3366	7	3	2	1	1	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0007	3366	7	1	5	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0008	3412	5	0	0	4	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0009	3487	4	3	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0010	3366	4	0	0	4	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0011	3412	3	1	0	2	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0012	3366	3	1	2	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0013	3366	3	3	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0014	3291	2	2	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0015	3486	2	2	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0016	3635	2	0	2	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0017	3366	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0018	3366	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0019	3577	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0020	3533	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0021	3495	1	0	1	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0022	3495	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0023	3612	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0024	3291	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0025	3291	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0026	3366	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0027	3291	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0028	3366	1	0	0	0	1	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0029	3366	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0030	3458	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0031	3569	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0032	4303	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0033	3608	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0034	3570	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0035	3653	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0036	3736	1	1	0	0	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0037	3366	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0038	3366	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0039	3612	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0040	3533	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0041	3654	1	0	0	0	0	1	copy fasta	KDM4B	chr19	4964113	5158598
KDM4B_chr19_4964113_5158598	0/0	c0042	3616	1	0	0	1	0	0	copy fasta	KDM4B	chr19	4964113	5158598
KDM4C_chr9_6752973_7180648	0/0	c0001	3171	44	18	8	17	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	1/0	c0002	3171	31	13	8	5	1	3	copy fasta	KDM4C	chr9	6752973	7180648