JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM4C_chr9_6752973_7180648	0/0	c0003	3171	28	2	0	24	1	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0004	3171	19	10	3	2	1	3	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0005	3171	12	1	1	7	0	3	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0006	3171	11	1	5	5	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0007	3171	10	7	2	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0008	3171	8	4	0	3	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0009	3171	8	4	1	2	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0010	3171	5	0	5	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0011	3171	5	2	0	3	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0012	3171	5	2	0	2	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0013	3171	3	0	2	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0014	3171	3	2	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0015	3171	3	1	2	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0016	3171	3	0	2	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0017	3171	3	1	0	1	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0018	3171	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0019	3171	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0020	3171	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0021	3171	2	0	0	0	0	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0022	3171	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0023	3171	2	2	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0024	3171	2	1	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/1	c0025	3171	2	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0026	3171	2	0	0	0	1	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0027	3171	2	1	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0028	3171	2	0	0	0	0	2	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0029	3171	2	0	0	2	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0030	3171	2	0	2	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0031	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0032	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0033	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0034	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0035	3171	1	0	0	0	1	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0036	3171	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0037	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0038	3171	1	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0039	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0040	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0041	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0042	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0043	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0044	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0045	3171	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0046	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0047	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0048	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0049	3171	1	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0050	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0051	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0052	3171	1	0	0	0	0	1	copy fasta	KDM4C	chr9	6752973	7180648