JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM4C_chr9_6752973_7180648	0/0	c0053	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0054	3171	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0055	3171	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0056	3171	1	0	1	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0057	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0058	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0059	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0060	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0061	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0062	3171	1	0	0	0	1	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0063	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0064	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0065	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0066	3171	1	0	0	1	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0067	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0068	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4C_chr9_6752973_7180648	0/0	c0069	3171	1	1	0	0	0	0	copy fasta	KDM4C	chr9	6752973	7180648
KDM4D_chr11_94968709_95004519	1/1	c0001	1572	251	77	51	86	9	26	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0002	1572	146	9	25	93	5	14	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0003	1572	6	6	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0004	1572	3	0	0	0	0	3	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0005	1572	2	0	0	2	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0006	1572	1	0	0	1	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0007	1572	1	0	0	0	0	1	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4D_chr11_94968709_95004519	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	KDM4D	chr11	94968709	95004519
KDM4E_chr11_95020258_95032596	0/0	c0001	1521	243	64	47	91	15	26	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0002	1521	81	0	11	65	1	4	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0003	1521	41	3	0	34	0	4	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	1/1	c0004	1521	24	4	11	0	2	5	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0005	1521	24	0	4	16	0	4	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0006	1521	19	14	2	0	0	3	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0007	1521	5	4	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0008	1521	3	3	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0009	1521	2	2	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0010	1521	2	2	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0011	1521	2	0	2	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0012	1521	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0013	1521	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0014	1521	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0015	1521	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0016	1521	1	0	0	1	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0017	1521	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0018	1521	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0019	1521	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0020	1521	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0021	1521	1	1	0	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0022	1521	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0023	1521	1	0	0	0	0	1	copy fasta	KDM4E	chr11	95020258	95032596
KDM4E_chr11_95020258_95032596	0/0	c0024	1521	1	0	1	0	0	0	copy fasta	KDM4E	chr11	95020258	95032596