JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM5B_chr1_202719495_202813421	0/1	c0001	4635	186	18	42	96	8	21	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	1/0	c0002	4635	111	48	12	34	2	14	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0003	4635	56	6	7	41	0	2	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0004	4635	3	0	3	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0005	4635	3	3	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0006	4635	3	0	0	3	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0007	4635	2	0	0	0	0	2	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0008	4635	2	2	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0009	4635	2	0	0	2	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0010	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0011	4635	1	0	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0012	4635	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0013	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0014	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0015	4635	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0016	4635	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0017	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0018	4635	1	0	1	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0019	4635	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0020	4635	1	1	0	0	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0021	4635	1	0	0	0	0	1	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0022	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5B_chr1_202719495_202813421	0/0	c0023	4635	1	0	0	1	0	0	copy fasta	KDM5B	chr1	202719495	202813421
KDM5C_chrX_53187158_53230207	1/1	c0001	4683	230	65	29	107	5	22	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0002	4683	2	2	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0003	4683	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0004	4682	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0005	4683	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0006	4683	1	0	1	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0007	4683	1	0	1	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0008	4683	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0009	4683	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0010	4683	1	1	0	0	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5C_chrX_53187158_53230207	0/0	c0011	4686	1	0	0	1	0	0	copy fasta	KDM5C	chrX	53187158	53230207
KDM5D_chrY_19698865_19749726	1/1	c0001	4620	119	17	20	59	5	16	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0002	4620	6	0	0	6	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0003	4620	2	0	0	2	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0004	4620	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0005	4620	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0006	4620	1	1	0	0	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM5D_chrY_19698865_19749726	0/0	c0007	4620	1	0	0	1	0	0	copy fasta	KDM5D	chrY	19698865	19749726
KDM6A_chrX_44868188_45117779	1/1	c0001	4362	103	45	22	20	6	8	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0002	4362	43	3	0	36	0	4	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0003	4362	37	2	7	20	0	8	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0004	4362	4	4	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0005	4365	3	3	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0006	4362	2	2	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0007	4362	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0008	4361	1	0	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0009	4362	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779