JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM6A_chrX_44868188_45117779	0/0	c0010	4362	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0011	4424	1	0	0	0	1	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0012	4363	1	0	0	1	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6A_chrX_44868188_45117779	0/0	c0013	4362	1	1	0	0	0	0	copy fasta	KDM6A	chrX	44868188	45117779
KDM6B_chr17_7829217_7859796	0/0	c0001	4938	75	19	16	17	9	14	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0002	4938	41	2	1	37	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0003	4920	37	0	4	27	0	6	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/1	c0004	4938	23	0	12	0	5	5	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0005	4938	18	15	1	0	0	2	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0006	4938	13	0	1	11	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0007	4941	12	2	3	6	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0008	4920	9	0	9	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0009	4938	9	8	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0010	4941	8	0	0	8	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0011	4941	8	1	6	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0012	4923	8	0	0	7	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0013	4938	6	5	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0014	4939	5	0	1	4	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0015	4938	5	5	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0016	4938	4	4	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0017	4938	4	1	1	0	1	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0018	4939	4	1	0	2	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0019	4939	4	1	1	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0020	4935	4	4	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0021	4935	4	4	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0022	4938	3	0	0	0	0	3	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0023	4938	3	0	2	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0024	4938	2	0	2	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0025	4942	2	0	1	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0026	4941	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0027	4939	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0028	4938	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0029	4938	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0030	4938	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0031	4938	2	2	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0032	4926	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0033	4923	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0034	4921	2	0	2	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0035	4922	2	0	0	2	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0036	4944	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0037	4935	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0038	4950	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0039	4947	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0040	4944	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0041	4942	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0042	4942	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0043	4941	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0044	4942	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0045	4940	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0046	4939	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796