JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM6B_chr17_7829217_7859796	0/0	c0047	4939	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0048	4938	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0049	4940	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0050	4939	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0051	4939	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0052	4939	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0053	4938	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0054	4938	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0055	4939	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0056	4938	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0057	4940	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0058	4939	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0059	4939	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0060	4938	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0061	4940	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0062	4939	1	0	0	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0063	4941	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0064	4939	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0065	4938	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0066	4939	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0067	4932	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0068	4938	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0069	4935	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0070	4936	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0071	4935	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0072	4932	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0073	4932	1	0	0	0	1	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	1/0	c0074	4932	1	0	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0075	4926	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0076	4923	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0077	4923	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0078	4921	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0079	4920	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0080	4921	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0081	4920	1	0	1	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0082	4932	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0083	4932	1	0	0	0	0	1	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0084	4953	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0085	4941	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0086	4942	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0087	4938	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0088	4939	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0089	4937	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0090	4936	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0091	4932	1	1	0	0	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM6B_chr17_7829217_7859796	0/0	c0092	4923	1	0	0	1	0	0	copy fasta	KDM6B	chr17	7829217	7859796
KDM7A_chr7_140079746_140181983	1/1	c0001	2826	200	44	36	90	9	19	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0002	2826	119	35	24	44	3	13	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0003	2826	10	0	0	10	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0004	2826	3	0	0	3	0	0	copy fasta	KDM7A	chr7	140079746	140181983