JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALS2CL_chr3_46663995_46698679	0/0	c0038	2862	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2_chr2_201695267_201785933	0/0	c0001	4974	131	41	8	65	2	15	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/1	c0002	4974	94	2	26	46	7	12	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0003	4974	60	5	5	42	1	7	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0004	4974	19	7	10	1	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0005	4974	12	9	2	0	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	1/0	c0006	4974	6	3	1	0	1	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0007	4974	6	4	1	0	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0008	4974	4	0	4	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0009	4974	4	0	0	0	3	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0010	4974	2	0	0	2	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0011	4974	2	2	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0012	4974	2	0	0	2	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0013	4974	2	0	0	0	2	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0014	4974	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0015	4974	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0016	4974	1	0	1	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0017	4974	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0018	4974	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0019	4974	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0020	4974	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0021	4974	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0022	4974	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	c0023	4974	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALX1_chr12_85275220_85306784	1/1	c0001	981	370	81	67	175	13	32	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0002	981	4	4	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0003	981	3	0	0	0	0	3	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0004	981	1	1	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0005	981	1	0	0	1	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0006	981	1	0	0	0	0	1	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0007	981	1	0	1	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0008	981	1	1	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0009	981	1	1	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	c0010	981	1	0	0	0	1	0	copy fasta	ALX1	chr12	85275220	85306784
ALX3_chr1_110054870_110075672	1/1	c0001	1032	410	91	71	190	17	39	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0002	1032	3	3	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0003	1032	2	0	0	2	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0004	1032	2	0	0	2	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0005	1032	1	0	1	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0007	1032	1	0	0	0	0	1	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0008	1032	1	1	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	c0009	1032	1	0	0	0	1	0	copy fasta	ALX3	chr1	110054870	110075672
ALX4_chr11_44255440_44315139	0/0	c0001	1236	87	6	19	57	2	3	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/1	c0002	1236	78	35	12	18	8	4	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0003	1236	68	1	12	43	1	11	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0004	1236	45	0	7	28	2	8	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0005	1236	23	1	2	17	0	3	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0006	1236	17	16	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0007	1236	14	6	4	0	3	1	copy fasta	ALX4	chr11	44255440	44315139