JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KDM7A_chr7_140079746_140181983	0/0	c0005	2826	2	0	0	0	0	2	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0006	2826	2	2	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0007	2826	2	0	0	2	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0008	2826	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0009	2826	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0010	2826	1	0	0	1	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0011	2826	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0012	2826	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM7A_chr7_140079746_140181983	0/0	c0013	2826	1	1	0	0	0	0	copy fasta	KDM7A	chr7	140079746	140181983
KDM8_chr16_27198526_27226768	1/1	c0001	1251	364	83	64	167	11	37	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0002	1251	31	11	9	2	1	8	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0003	1251	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0004	1251	1	0	0	0	0	1	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0005	1251	1	1	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0006	1251	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDM8_chr16_27198526_27226768	0/0	c0009	1251	1	0	1	0	0	0	copy fasta	KDM8	chr16	27198526	27226768
KDR_chr4_55073481_55130595	1/0	c0001	4071	238	53	48	95	10	31	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0002	4071	74	3	12	47	3	9	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0003	4071	29	21	3	2	0	3	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0004	4071	25	0	5	19	1	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0005	4071	3	2	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0006	4071	2	1	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0007	4071	2	2	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0008	4071	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0009	4071	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0010	4071	2	2	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0011	4071	2	0	0	2	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0012	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0013	4071	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0014	4071	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0015	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0016	4071	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0017	4071	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0018	4071	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0019	4071	1	0	0	0	0	1	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0020	4071	1	0	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0021	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0022	4071	1	0	1	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0023	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0024	4071	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/1	c0025	4071	1	0	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0026	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0027	4071	1	0	0	1	0	0	copy fasta	KDR	chr4	55073481	55130595
KDR_chr4_55073481_55130595	0/0	c0028	4071	1	1	0	0	0	0	copy fasta	KDR	chr4	55073481	55130595
KDSR_chr18_63322726_63372206	0/1	c0001	999	225	39	56	87	9	33	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	1/0	c0002	999	180	45	28	94	3	9	copy fasta	KDSR	chr18	63322726	63372206
KDSR_chr18_63322726_63372206	0/0	c0003	999	1	0	0	1	0	0	copy fasta	KDSR	chr18	63322726	63372206
KEAP1_chr19_10481125_10508356	1/0	c0001	1875	166	18	45	73	9	20	copy fasta	KEAP1	chr19	10481125	10508356