JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KEAP1_chr19_10481125_10508356	0/1	c0002	1875	140	60	16	39	4	20	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0003	1875	56	1	1	51	0	3	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0004	1875	20	16	3	0	0	1	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0005	1875	2	0	2	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0006	1875	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0007	1875	1	0	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0008	1875	1	0	0	0	1	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0009	1875	1	0	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0010	1875	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0011	1875	1	0	1	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0012	1875	1	1	0	0	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEAP1_chr19_10481125_10508356	0/0	c0013	1875	1	0	0	1	0	0	copy fasta	KEAP1	chr19	10481125	10508356
KEL_chr7_142936114_142967363	0/1	c0001	2199	176	40	49	45	13	28	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0002	2199	31	19	3	9	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0003	2199	20	18	2	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0004	2199	12	12	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0005	2199	3	3	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0006	2199	3	0	2	0	1	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0007	2199	2	0	0	2	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0008	2199	1	0	1	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0009	2199	1	0	0	1	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0010	2199	1	1	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0011	2199	1	0	1	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0012	2199	1	1	0	0	0	0	copy fasta	KEL	chr7	142936114	142967363
KEL_chr7_142936114_142967363	0/0	c0013	2199	1	0	0	1	0	0	copy fasta	KEL	chr7	142936114	142967363
KERA_chr12_91045491_91063024	0/0	c0001	1059	242	24	60	121	13	24	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/1	c0002	1059	93	59	15	15	0	3	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	1/0	c0003	1059	64	14	8	31	0	10	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0004	1059	2	0	0	0	1	1	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0005	1059	2	0	0	2	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0006	1059	2	0	0	2	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0007	1059	1	0	0	1	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0008	1059	1	1	0	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KERA_chr12_91045491_91063024	0/0	c0009	1059	1	0	1	0	0	0	copy fasta	KERA	chr12	91045491	91063024
KHDC1L_chr6_73218544_73230496	1/1	c0001	387	401	91	68	185	12	43	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0002	387	12	2	1	8	0	1	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0003	387	2	0	0	2	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0004	387	2	2	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0005	387	1	0	0	1	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0006	387	1	0	1	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1L_chr6_73218544_73230496	0/0	c0007	275	1	1	0	0	0	0	copy fasta	KHDC1L	chr6	73218544	73230496
KHDC1_chr6_73236314_73268196	1/1	c0001	495	326	98	54	126	10	36	copy fasta	KHDC1	chr6	73236314	73268196
KHDC3L_chr6_73357658_73369171	1/1	c0001	654	219	62	42	97	1	15	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0002	654	181	27	32	91	10	21	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0003	654	22	1	4	6	7	4	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0004	654	7	0	0	7	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0005	585	2	0	0	2	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0006	654	2	2	0	0	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC3L_chr6_73357658_73369171	0/0	c0007	654	1	0	0	1	0	0	copy fasta	KHDC3L	chr6	73357658	73369171
KHDC4_chr1_155908045_155939413	1/1	c0001	1845	325	94	52	133	10	34	copy fasta	KHDC4	chr1	155908045	155939413