JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KHDC4_chr1_155908045_155939413	0/0	c0002	1845	1	0	0	1	0	0	copy fasta	KHDC4	chr1	155908045	155939413
KHDRBS1_chr1_32008868_32048877	1/1	c0001	1332	267	71	49	107	12	26	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	c0002	1332	2	2	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	c0003	1332	1	0	1	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	c0004	1332	1	1	0	0	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS1_chr1_32008868_32048877	0/0	c0005	1332	1	0	0	1	0	0	copy fasta	KHDRBS1	chr1	32008868	32048877
KHDRBS2_chr6_61674961_62291225	0/0	c0001	1050	88	24	7	41	7	9	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0002	1050	56	14	10	20	6	6	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/1	c0003	1050	54	32	6	11	0	4	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0004	1050	35	5	1	21	0	8	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0005	1050	2	0	0	0	0	2	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0006	1050	2	1	0	0	1	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0007	1050	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0008	1050	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0009	1050	1	0	0	0	0	1	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0011	1050	1	0	0	1	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	1/0	c0012	1050	1	0	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS2_chr6_61674961_62291225	0/0	c0013	1050	1	1	0	0	0	0	copy fasta	KHDRBS2	chr6	61674961	62291225
KHDRBS3_chr8_135452456_135652610	1/0	c0001	1041	333	84	67	136	12	33	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	c0002	1041	6	5	1	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/1	c0003	1041	1	0	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	c0004	1041	1	0	0	0	0	1	copy fasta	KHDRBS3	chr8	135452456	135652610
KHDRBS3_chr8_135452456_135652610	0/0	c0005	1041	1	1	0	0	0	0	copy fasta	KHDRBS3	chr8	135452456	135652610
KHK_chr2_27081772_27105762	1/1	c0001	897	196	55	36	72	9	22	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0002	897	121	33	32	40	5	11	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0003	897	2	0	0	0	2	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0004	897	2	2	0	0	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0005	897	1	0	0	0	0	1	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0006	897	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHK_chr2_27081772_27105762	0/0	c0007	897	1	0	0	1	0	0	copy fasta	KHK	chr2	27081772	27105762
KHNYN_chr14_24424954_24446843	0/1	c0001	2037	201	73	23	87	4	13	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0002	2037	196	4	46	111	10	25	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0003	2037	35	3	8	18	3	3	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	1/0	c0004	2037	18	8	1	4	0	4	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0005	2037	2	0	0	2	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0006	2037	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0007	2037	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0008	2037	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0009	2037	1	0	0	0	1	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0010	2037	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0011	2037	1	0	0	0	0	1	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0012	2037	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0013	2037	1	0	1	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0014	2037	1	0	0	1	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHNYN_chr14_24424954_24446843	0/0	c0015	2037	1	1	0	0	0	0	copy fasta	KHNYN	chr14	24424954	24446843
KHSRP_chr19_6408102_6429811	0/1	c0001	2244	348	70	69	147	15	46	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0002	2244	6	3	3	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0003	2244	4	4	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	1/0	c0004	2244	4	3	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811