JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KHSRP_chr19_6408102_6429811	0/0	c0005	2244	3	3	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0006	2244	3	0	2	0	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0007	2244	2	0	1	0	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0008	2244	2	1	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0009	2244	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0010	2244	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0011	2244	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0012	2268	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0013	2244	1	0	0	0	1	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0014	2244	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0015	2244	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0016	2244	1	0	1	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0017	2244	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0018	2244	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0019	2244	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0020	2244	1	1	0	0	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0021	2244	1	0	0	0	0	1	copy fasta	KHSRP	chr19	6408102	6429811
KHSRP_chr19_6408102_6429811	0/0	c0022	2244	1	0	0	1	0	0	copy fasta	KHSRP	chr19	6408102	6429811
KIAA0040_chr1_175151986_175197776	0/0	c0001	300	174	36	34	81	4	19	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/1	c0002	291	112	42	22	31	5	11	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0003	303	71	1	2	58	3	7	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	1/0	c0004	300	17	7	3	2	0	4	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0005	300	8	3	0	5	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0006	309	7	5	0	1	0	1	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0007	306	3	0	1	2	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0008	300	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0040_chr1_175151986_175197776	0/0	c0009	291	1	1	0	0	0	0	copy fasta	KIAA0040	chr1	175151986	175197776
KIAA0232_chr4_6777727_6889164	1/1	c0001	4188	317	75	40	151	14	35	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0002	4188	8	7	1	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0003	4188	7	0	4	3	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0004	4188	6	1	1	0	0	4	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0005	4188	5	0	1	4	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0006	4188	3	2	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0007	4188	2	1	1	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0008	4188	2	0	2	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0009	4188	2	0	0	2	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0010	4188	2	0	2	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0011	4188	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0012	4188	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0013	4188	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0014	4188	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0015	4188	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0016	4188	1	0	0	0	0	1	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0017	4188	1	0	0	1	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0232_chr4_6777727_6889164	0/0	c0018	4188	1	1	0	0	0	0	copy fasta	KIAA0232	chr4	6777727	6889164
KIAA0319L_chr1_35428492_35562403	0/0	c0001	3150	120	54	14	47	0	5	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	1/1	c0002	3150	96	20	26	30	5	13	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0003	3150	43	2	8	31	0	2	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0004	3150	24	11	0	10	2	1	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0005	3150	18	0	2	15	1	0	copy fasta	KIAA0319L	chr1	35428492	35562403