JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA0319L_chr1_35428492_35562403	0/0	c0006	3150	6	6	0	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0007	3150	4	0	0	4	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0008	3150	3	0	0	3	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0009	3150	2	2	0	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0010	3150	1	0	1	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0011	3150	1	1	0	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0012	3150	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0013	3150	1	0	0	0	0	1	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0014	3150	1	0	1	0	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0015	3150	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0016	3150	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319L_chr1_35428492_35562403	0/0	c0017	3150	1	0	0	1	0	0	copy fasta	KIAA0319L	chr1	35428492	35562403
KIAA0319_chr6_24539107_24651191	0/0	c0001	3219	162	44	27	77	4	10	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/1	c0002	3219	29	0	4	16	4	4	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	1/0	c0003	3219	18	3	5	5	2	2	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0004	3219	18	6	2	1	1	8	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0005	3219	13	4	3	3	0	3	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0006	3219	12	11	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0007	3219	7	0	4	0	0	3	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0008	3219	6	0	4	1	1	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0009	3219	3	3	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0010	3219	3	3	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0011	3219	3	3	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0012	3219	2	2	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0013	3219	2	2	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0014	3219	2	0	1	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0015	3219	2	1	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0016	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0017	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0018	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0019	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0020	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0021	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0022	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0023	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0024	3219	1	0	0	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0025	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0026	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0027	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0028	3219	1	0	1	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0029	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0030	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0031	3219	1	0	0	1	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0032	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0319_chr6_24539107_24651191	0/0	c0033	3219	1	1	0	0	0	0	copy fasta	KIAA0319	chr6	24539107	24651191
KIAA0408_chr6_127433406_127464389	1/0	c0001	2085	113	33	8	47	3	21	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	c0002	2085	106	3	26	72	1	4	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/1	c0003	2085	100	38	31	9	5	16	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	c0004	2085	6	6	0	0	0	0	copy fasta	KIAA0408	chr6	127433406	127464389
KIAA0408_chr6_127433406_127464389	0/0	c0005	2085	5	0	0	4	1	0	copy fasta	KIAA0408	chr6	127433406	127464389