JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA0753_chr17_6573147_6645711	0/1	c0003	2904	89	3	15	57	5	8	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0004	2904	16	15	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0005	2904	10	5	2	0	0	3	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0006	2904	7	6	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0007	2904	6	5	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0008	2904	5	5	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0009	2904	5	5	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0010	2904	2	2	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0011	2904	2	2	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0012	2904	2	2	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0013	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0014	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0015	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0016	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0017	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0018	2904	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0019	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0020	2904	1	0	1	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0021	2904	1	0	0	0	0	1	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0022	2904	1	1	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	1/0	c0023	2904	1	0	0	0	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0024	2904	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0753_chr17_6573147_6645711	0/0	c0025	2904	1	0	0	1	0	0	copy fasta	KIAA0753	chr17	6573147	6645711
KIAA0825_chr5_94145851_94623604	0/0	c0001	3828	25	12	5	7	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0002	3828	5	3	2	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0003	3828	4	4	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0004	3828	3	2	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0005	3828	3	2	1	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0006	3828	2	0	0	0	0	2	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0007	3828	2	0	2	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0008	3828	2	2	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0009	3828	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0010	3828	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0011	3828	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0012	3828	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0013	3828	1	0	0	1	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0014	3828	1	0	0	0	0	1	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0015	3828	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0825_chr5_94145851_94623604	0/0	c0016	3828	1	1	0	0	0	0	copy fasta	KIAA0825	chr5	94145851	94623604
KIAA0930_chr22_45187244_45245894	1/1	c0001	1215	356	68	71	153	18	44	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0002	1215	13	11	2	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0003	1215	11	10	1	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0004	1215	10	0	0	10	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0005	1215	2	0	0	0	0	2	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0006	1215	1	0	0	1	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0007	1215	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0008	1215	1	0	0	0	0	1	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0010	1215	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894
KIAA0930_chr22_45187244_45245894	0/0	c0011	1215	1	1	0	0	0	0	copy fasta	KIAA0930	chr22	45187244	45245894