JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1217_chr10_24204138_24552843	0/0	c0012	5832	4	0	1	2	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0013	5832	4	0	1	3	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0014	5832	4	0	0	4	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0015	5832	4	0	4	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0016	5832	3	2	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0017	5832	3	3	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0018	5832	2	2	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0019	5832	2	2	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0020	5832	2	0	0	2	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0021	5832	2	0	1	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0022	5832	2	1	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0023	5832	2	1	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0024	5832	2	0	2	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0025	5832	2	2	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0026	5832	2	0	0	2	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0027	5832	2	2	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0028	5832	2	0	2	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0029	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0030	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0031	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0032	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0033	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0034	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0035	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0036	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0037	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0038	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0039	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0040	5832	1	0	0	0	1	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0041	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0042	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0043	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0044	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0045	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0046	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0047	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0048	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0049	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0050	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0051	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0052	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0053	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0054	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0055	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0056	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0057	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0058	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0059	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0060	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0061	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843