JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1217_chr10_24204138_24552843	0/0	c0062	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0063	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0064	5832	1	0	0	0	1	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0065	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0066	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0067	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0068	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0069	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0070	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0071	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0072	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0073	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0074	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0075	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0076	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0077	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0078	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0079	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0080	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0081	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0082	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0083	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0084	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0085	5832	1	0	0	1	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0086	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0087	5832	1	1	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/1	c0088	5832	1	0	0	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0089	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0090	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0091	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0092	5832	1	0	0	0	0	1	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0093	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1217_chr10_24204138_24552843	0/0	c0094	5832	1	0	1	0	0	0	copy fasta	KIAA1217	chr10	24204138	24552843
KIAA1328_chr18_36824127_37230334	1/0	c0001	1734	82	21	19	27	6	8	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0002	1734	74	34	7	25	4	4	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/1	c0003	1734	18	3	12	0	1	1	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0004	1734	8	8	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0005	1734	6	0	1	0	1	4	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0006	1734	3	0	3	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0007	1734	2	1	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0008	1734	1	0	0	0	0	1	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0009	1734	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0010	1734	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0011	1734	1	0	1	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0012	1734	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0013	1734	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1328_chr18_36824127_37230334	0/0	c0014	1734	1	1	0	0	0	0	copy fasta	KIAA1328	chr18	36824127	37230334
KIAA1522_chr1_32736830_32779970	1/0	c0001	3285	164	43	24	64	8	24	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0002	3285	97	5	25	46	6	15	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0003	3285	33	18	11	0	1	3	copy fasta	KIAA1522	chr1	32736830	32779970