JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALX4_chr11_44255440_44315139	0/0	c0008	1236	13	0	1	8	1	3	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0009	1224	8	7	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0010	1236	6	4	2	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0011	1236	3	1	2	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0012	1236	3	0	1	0	1	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0013	1236	2	0	1	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0014	1236	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0015	1236	2	2	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	1/0	c0016	1236	2	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0017	1236	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0018	1236	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0019	1236	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0020	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0021	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0022	1224	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0023	1224	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0024	1224	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0025	1236	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0026	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0027	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0028	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0029	1236	1	0	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0030	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	c0031	1236	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALYREF_chr17_81882835_81896586	1/1	c0001	795	301	69	65	113	8	44	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0002	795	14	13	1	0	0	0	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0003	795	3	0	0	3	0	0	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0004	795	1	1	0	0	0	0	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0005	795	1	0	0	0	0	1	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0006	795	1	0	0	0	0	1	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	c0007	807	1	1	0	0	0	0	copy fasta	ALYREF	chr17	81882835	81896586
AMACR_chr5_33981165_34013050	0/0	c0001	1149	140	40	16	72	4	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0002	1149	104	3	25	71	2	3	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	1/0	c0003	1149	56	5	14	14	0	22	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/1	c0004	1149	39	3	2	25	0	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0005	1149	28	6	5	15	1	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0006	1149	12	9	2	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0007	1149	11	0	2	8	0	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0008	1149	10	10	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0009	1149	9	3	1	3	0	2	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0010	1149	5	0	0	5	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0011	1149	4	3	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0012	1149	4	4	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0013	1149	4	1	1	0	1	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0014	1149	3	3	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0015	1149	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0016	1149	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0017	1149	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0018	1149	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0019	1106	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050