JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1522_chr1_32736830_32779970	0/0	c0004	3285	8	0	0	8	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0005	3285	5	0	0	5	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0006	3285	4	3	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/1	c0007	3285	4	2	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0008	3285	4	4	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0009	3285	3	3	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0010	3285	3	3	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0011	3285	2	2	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0012	3285	2	2	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0013	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0014	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0015	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0016	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0017	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0018	3285	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0019	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0020	3285	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0021	3285	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0022	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0023	3285	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0024	3285	1	1	0	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0025	3285	1	0	0	0	1	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0026	3285	1	0	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0027	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0028	3285	1	0	0	1	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0029	3285	1	0	1	0	0	0	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0030	3285	1	0	0	0	0	1	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1522_chr1_32736830_32779970	0/0	c0031	3285	1	0	0	0	0	1	copy fasta	KIAA1522	chr1	32736830	32779970
KIAA1549L_chr11_33371108_33679102	1/0	c0001	6441	24	1	3	12	1	6	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0002	6441	19	1	7	11	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0003	6441	13	0	4	8	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0004	6441	9	0	0	9	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/1	c0005	6441	8	1	2	1	1	2	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0006	6441	8	0	3	5	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0007	6441	8	0	3	4	1	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0008	6441	6	6	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0009	6441	5	4	1	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0010	6441	4	4	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0011	6441	3	3	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0012	6441	3	0	1	0	0	2	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0013	6441	3	2	0	0	0	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0014	6441	3	1	2	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0015	6441	3	3	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0016	6441	3	0	0	1	1	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0017	6441	3	0	1	2	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0018	6441	3	0	2	1	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0019	6441	3	0	1	0	1	1	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0020	6441	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0021	6441	2	2	0	0	0	0	copy fasta	KIAA1549L	chr11	33371108	33679102
KIAA1549L_chr11_33371108_33679102	0/0	c0022	6441	2	0	0	0	0	2	copy fasta	KIAA1549L	chr11	33371108	33679102