JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1586_chr6_57041693_57060225	0/0	c0010	2364	1	0	0	1	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1586_chr6_57041693_57060225	0/0	c0011	2364	1	1	0	0	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1586_chr6_57041693_57060225	0/0	c0012	2364	1	1	0	0	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1586_chr6_57041693_57060225	0/0	c0013	2364	1	0	0	1	0	0	copy fasta	KIAA1586	chr6	57041693	57060225
KIAA1614_chr1_180907897_180956614	0/0	c0001	3573	89	2	21	53	8	5	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0002	3573	77	6	15	37	4	15	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/1	c0003	3573	58	5	2	45	0	5	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0004	3573	54	42	4	7	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0005	3573	26	5	10	7	2	2	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0006	3573	24	3	5	10	0	6	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0007	3573	13	0	4	8	1	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0008	3573	8	0	8	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0009	3573	8	0	0	8	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0010	3573	7	6	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0011	3573	4	4	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0012	3573	4	0	0	4	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0013	3573	4	0	0	4	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0014	3573	3	0	0	2	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0015	3573	3	3	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0016	3573	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0017	3573	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0018	3573	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0019	3573	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0020	3573	2	2	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0021	3573	2	0	0	2	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	1/0	c0022	3573	2	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0023	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0024	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0025	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0026	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0027	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0028	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0029	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0030	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0031	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0032	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0033	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0034	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0035	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0036	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0037	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0038	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0039	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0040	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0041	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0042	3492	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0043	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0044	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0045	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0046	3573	1	0	0	0	1	0	copy fasta	KIAA1614	chr1	180907897	180956614