JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1614_chr1_180907897_180956614	0/0	c0047	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0048	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0049	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0050	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0051	3573	1	0	1	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0052	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0053	3573	1	1	0	0	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0054	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0055	3573	1	0	0	1	0	0	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1614_chr1_180907897_180956614	0/0	c0056	3573	1	0	0	0	0	1	copy fasta	KIAA1614	chr1	180907897	180956614
KIAA1671_chr22_24947716_25202448	0/1	c0001	5421	19	1	5	7	1	4	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0002	5421	16	0	3	13	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0003	5421	10	0	5	1	0	4	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0004	5421	10	1	1	3	2	3	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0005	5421	7	7	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0006	5421	7	0	1	5	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0007	5421	6	0	0	6	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0008	5421	6	1	1	3	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0009	5421	5	0	1	2	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0010	5421	5	0	0	3	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0011	5421	4	4	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0012	5421	4	2	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0013	5421	4	0	0	4	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	1/0	c0014	5421	4	0	0	2	1	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0015	5421	4	4	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0016	5421	3	1	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0017	5421	3	0	2	0	1	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0018	5421	3	3	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0019	5421	3	3	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0020	5421	3	0	0	3	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0021	5421	2	2	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0022	5421	2	0	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0023	5421	2	0	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0024	5421	2	0	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0025	5421	2	1	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0026	5421	2	0	0	2	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0027	5421	2	0	0	0	1	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0028	5421	2	0	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0029	5421	2	0	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0030	5421	2	1	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0031	5421	2	2	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0032	5421	2	1	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0033	5421	2	1	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0034	5421	2	1	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0035	5421	2	0	0	0	2	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0036	5421	2	0	0	2	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0037	5421	2	0	0	1	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0038	5421	2	0	0	2	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0039	5421	2	0	0	0	0	2	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0040	5421	2	0	2	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448