JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA1671_chr22_24947716_25202448	0/0	c0091	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0092	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0093	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0094	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0095	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0096	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0097	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0098	5421	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0099	5421	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0100	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0101	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0102	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0103	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0104	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0105	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0106	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0107	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0108	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0109	5421	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0110	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0111	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0112	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0113	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0114	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0115	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0116	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0117	5421	1	0	0	0	1	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0118	5421	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0119	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0120	5421	1	0	1	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0121	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0122	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0123	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0124	5421	1	1	0	0	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0125	5421	1	0	0	0	0	1	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0126	5421	1	0	0	1	0	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1671_chr22_24947716_25202448	0/0	c0127	5421	1	0	0	0	1	0	copy fasta	KIAA1671	chr22	24947716	25202448
KIAA1755_chr20_38205503_38265735	1/0	c0001	3603	120	25	24	56	1	13	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0002	3603	67	4	4	53	2	4	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0003	3603	30	1	8	13	4	4	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0004	3603	16	4	7	1	1	3	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0005	3603	10	0	0	10	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0006	3603	10	10	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0007	3603	9	3	4	1	0	1	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0008	3603	8	2	0	4	0	2	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0009	3603	7	0	0	6	0	1	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0010	3603	7	7	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0011	3603	7	4	0	0	0	3	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0012	3603	6	0	6	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735
KIAA1755_chr20_38205503_38265735	0/0	c0013	3603	5	5	0	0	0	0	copy fasta	KIAA1755	chr20	38205503	38265735