JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA2012_chr2_202068255_202210188	0/0	c0002	3546	52	11	8	22	2	9	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0003	3546	30	2	7	19	2	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0004	3546	29	8	7	7	1	6	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0005	3546	27	0	5	17	0	5	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0006	3546	24	8	9	1	3	3	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/1	c0007	3546	15	1	9	1	2	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0008	3546	13	10	1	1	0	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0009	3546	8	2	3	0	0	3	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0010	3546	6	0	5	0	1	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0011	3546	5	5	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0012	3546	4	4	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0013	3546	4	2	0	0	2	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0014	3546	4	0	0	4	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0015	3546	4	0	2	2	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0016	3546	3	3	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0017	3546	3	3	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0018	3546	2	1	1	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	1/0	c0019	3546	2	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0020	3546	2	2	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0021	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0022	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0023	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0024	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0025	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0026	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0027	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0028	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0029	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0030	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0031	3546	1	0	0	0	0	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0032	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0033	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0034	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0035	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0036	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0037	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0038	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0039	3546	1	0	0	1	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0040	3546	1	0	0	0	1	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0041	3546	1	0	1	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0042	3546	1	0	0	0	0	1	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2012_chr2_202068255_202210188	0/0	c0043	3546	1	1	0	0	0	0	copy fasta	KIAA2012	chr2	202068255	202210188
KIAA2013_chr1_11914591_11931427	0/0	c0001	1905	255	75	41	102	11	26	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	1/1	c0002	1905	153	18	34	76	7	16	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0003	1905	15	0	0	15	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0004	1905	6	0	0	5	0	1	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0005	1905	4	0	1	1	0	2	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0006	1905	3	0	0	3	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0007	1905	3	0	0	3	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0008	1905	2	2	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427