JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMACR_chr5_33981165_34013050	0/0	c0020	1149	1	0	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	c0021	1149	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMBN_chr4_70587256_70612288	1/1	c0001	1344	276	21	57	158	8	30	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0002	1344	79	38	7	29	0	5	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0003	1341	33	1	4	22	4	2	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0004	1344	20	3	10	2	3	2	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0005	1341	12	3	1	5	2	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0006	1344	7	7	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0007	1344	5	5	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0008	1344	4	3	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0009	1344	4	3	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0010	1344	4	0	2	0	1	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0011	1344	3	0	0	3	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0012	1344	3	0	0	3	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0013	1341	3	0	0	3	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0014	1344	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0015	1344	2	0	0	0	0	2	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0016	1344	2	0	0	0	0	2	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0017	1344	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0018	1341	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0019	1344	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0020	1344	1	0	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0021	1344	1	0	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0022	1344	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0023	1344	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0024	1363	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0025	1344	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0026	1312	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0027	1344	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0028	1285	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0029	1341	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0030	1341	1	0	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0031	1341	1	0	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0032	1344	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0033	1344	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	c0034	1344	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBP_chr9_114055127_114083300	1/1	c0001	1059	427	86	82	198	18	41	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0002	1059	15	7	1	5	0	2	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0003	1059	4	0	0	0	0	4	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0004	1059	2	2	0	0	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0006	1059	1	0	0	1	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0007	1059	1	0	1	0	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0008	1059	1	0	0	0	0	1	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0009	1059	1	0	0	1	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	c0010	1059	1	1	0	0	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBRA1_chr11_46391414_46599023	1/1	c0001	3897	121	51	21	31	2	14	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0002	3897	20	18	2	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0003	3897	8	8	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0004	3897	2	1	1	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023