JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIAA2013_chr1_11914591_11931427	0/0	c0009	1905	1	0	0	0	0	1	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0010	1905	1	0	0	1	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2013_chr1_11914591_11931427	0/0	c0011	1905	1	1	0	0	0	0	copy fasta	KIAA2013	chr1	11914591	11931427
KIAA2026_chr9_5914022_6013482	0/0	c0001	6312	82	11	21	32	4	14	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0002	6312	71	12	22	26	3	8	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0003	6312	52	6	7	36	1	2	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0004	6312	45	25	1	17	0	2	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	1/0	c0005	6312	35	0	7	27	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0006	6312	21	11	3	2	0	5	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0007	6312	7	7	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/1	c0008	6312	6	1	1	0	1	2	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0009	6312	5	0	0	5	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0010	6312	5	0	5	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0011	6312	4	0	0	4	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0012	6312	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0013	6312	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0014	6312	2	1	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0015	6312	2	0	0	2	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0016	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0017	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0018	6312	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0019	6312	1	0	0	0	1	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0020	6312	1	0	1	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0021	6312	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0022	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0023	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0024	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0025	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0026	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0027	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0028	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0029	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0030	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0031	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0032	6312	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0033	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0034	6291	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0035	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0036	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0037	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0038	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0039	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0040	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0041	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0042	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0043	6312	1	0	0	0	0	1	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0044	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0045	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0046	6312	1	1	0	0	0	0	copy fasta	KIAA2026	chr9	5914022	6013482
KIAA2026_chr9_5914022_6013482	0/0	c0047	6312	1	0	0	1	0	0	copy fasta	KIAA2026	chr9	5914022	6013482