JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF12_chr9_114086638_114104292	0/0	c0012	1956	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0013	1956	1	1	0	0	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0014	1956	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0015	1956	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0016	1956	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0017	1956	1	0	0	0	0	1	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0018	1956	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF12_chr9_114086638_114104292	0/0	c0019	1956	1	0	0	1	0	0	copy fasta	KIF12	chr9	114086638	114104292
KIF13A_chr6_17758693_17992635	0/1	c0001	5418	55	6	14	28	2	4	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0002	5418	55	3	9	38	2	3	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0003	5418	35	1	3	22	1	8	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0004	5418	31	23	4	0	1	3	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	1/0	c0005	5418	14	13	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0006	5418	12	3	1	7	0	1	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0007	5418	8	2	2	0	2	2	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0008	5418	6	5	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0009	5418	5	0	1	1	1	2	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0010	5418	5	5	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0011	5418	4	3	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0012	5418	3	0	0	3	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0013	5418	3	0	0	3	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0014	5418	3	3	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0015	5418	3	0	1	0	2	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0016	5418	3	3	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0017	5418	2	2	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0018	5418	2	0	0	2	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0019	5418	2	2	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0020	5418	2	2	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0021	5418	2	0	0	2	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0022	5418	2	0	0	2	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0023	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0024	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0025	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0026	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0027	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0028	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0029	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0030	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0031	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0032	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0033	5418	1	0	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0034	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0035	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0036	5418	1	0	0	0	1	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0037	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0038	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0039	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0040	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0041	5418	1	0	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0042	5418	1	0	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635