JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF13A_chr6_17758693_17992635	0/0	c0043	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0044	5418	1	1	0	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0045	5418	1	0	0	0	0	1	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0046	5418	1	0	1	0	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13A_chr6_17758693_17992635	0/0	c0047	5418	1	0	0	1	0	0	copy fasta	KIF13A	chr6	17758693	17992635
KIF13B_chr8_29062278_29268070	0/1	c0001	5481	157	45	32	56	6	17	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	1/0	c0002	5481	81	15	10	44	0	11	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0003	5481	7	6	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0004	5481	4	0	4	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0005	5481	3	2	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0006	5481	3	0	0	3	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0007	5481	2	0	0	0	0	2	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0008	5481	2	2	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0009	5481	2	0	0	0	0	2	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0010	5481	2	0	0	0	0	2	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0011	5481	2	2	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0012	5481	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0013	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0014	5481	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0015	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0016	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0017	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0018	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0019	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0020	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0021	5481	1	0	0	0	0	1	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0022	5481	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0023	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0024	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0025	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0026	5481	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0027	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0028	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0029	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0030	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0031	5481	1	0	1	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0032	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0033	5481	1	1	0	0	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF13B_chr8_29062278_29268070	0/0	c0034	5481	1	0	0	1	0	0	copy fasta	KIF13B	chr8	29062278	29268070
KIF14_chr1_200546500_200625751	0/0	c0001	4947	147	29	19	75	5	19	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	1/0	c0002	4947	79	8	24	36	4	6	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/1	c0003	4947	71	5	17	38	4	6	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0004	4947	43	37	5	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0005	4947	17	0	0	17	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0006	4947	8	7	1	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0007	4947	4	4	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0008	4947	4	0	2	0	1	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0009	4947	3	0	0	3	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0010	4947	2	0	0	0	0	2	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0011	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751