JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF14_chr1_200546500_200625751	0/0	c0012	4947	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0013	4947	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0014	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0015	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0016	4947	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0017	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0018	4947	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0019	4947	1	0	0	0	0	1	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0020	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0021	4947	1	0	0	1	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF14_chr1_200546500_200625751	0/0	c0022	4947	1	1	0	0	0	0	copy fasta	KIF14	chr1	200546500	200625751
KIF15_chr3_44756794_44858256	0/1	c0001	4167	90	17	29	23	6	14	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	1/0	c0002	4167	77	40	10	17	1	8	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0003	4167	17	2	8	6	1	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0004	4167	11	2	7	0	2	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0005	4167	7	7	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0006	4167	5	5	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0007	4167	4	4	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0008	4167	3	2	0	0	1	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0009	4167	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0010	4167	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0011	4167	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0012	4167	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0013	4167	2	2	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0014	4167	1	1	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0015	4167	1	1	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0016	4167	1	1	0	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0017	4167	1	0	0	0	1	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0018	4167	1	0	1	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0019	4167	1	0	1	0	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0020	4167	1	0	0	1	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF15_chr3_44756794_44858256	0/0	c0021	4167	1	0	0	1	0	0	copy fasta	KIF15	chr3	44756794	44858256
KIF16B_chr20_16267104_16578448	0/1	c0001	3954	101	27	21	40	3	9	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0002	3954	41	4	5	28	1	3	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	1/0	c0003	3954	25	12	5	1	3	3	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0004	3954	13	5	0	7	0	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0005	3954	11	8	1	0	0	2	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0006	3954	10	1	5	2	0	2	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0007	3954	9	7	0	0	1	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0008	3954	6	5	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0009	3954	5	0	0	5	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0010	3954	3	0	3	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0011	3954	3	1	2	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0012	3954	2	2	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0013	3954	2	2	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0014	3954	2	0	1	0	0	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0015	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0016	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0017	3954	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0018	3954	1	0	0	0	0	1	copy fasta	KIF16B	chr20	16267104	16578448