JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF16B_chr20_16267104_16578448	0/0	c0019	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0020	3954	1	0	0	1	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0021	3954	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0022	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0023	3954	1	0	0	0	0	1	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0024	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0025	3954	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0026	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0027	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0028	3954	1	0	1	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0029	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0030	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF16B_chr20_16267104_16578448	0/0	c0031	3954	1	1	0	0	0	0	copy fasta	KIF16B	chr20	16267104	16578448
KIF17_chr1_20659014_20723007	0/0	c0001	3087	25	3	11	1	4	6	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0002	3087	23	2	3	12	1	5	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0003	3087	21	0	1	20	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0004	3087	18	0	11	4	1	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0005	3087	17	0	1	12	1	3	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0006	3087	14	0	3	9	0	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0007	3087	14	2	6	3	2	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0008	3087	12	1	0	9	0	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0009	3087	11	1	3	7	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0010	3087	10	0	1	8	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0011	3087	9	1	2	3	1	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0012	3087	9	8	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0013	3087	7	0	1	3	0	3	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0014	3087	6	0	0	4	0	2	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0015	3087	6	5	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0016	3087	5	0	4	0	1	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0017	3087	5	0	2	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0018	3087	5	0	0	4	1	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0019	3087	5	0	0	5	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0020	3087	5	0	5	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0021	3087	4	4	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0022	3087	4	4	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0023	3087	4	4	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0024	3087	4	0	0	4	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0025	3087	4	0	0	4	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0026	3087	4	2	2	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	1/0	c0027	3087	4	0	1	0	1	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0028	3087	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0029	3087	3	3	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0030	3087	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0031	3087	3	1	0	2	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0032	3087	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0033	3087	3	2	1	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0034	3087	3	1	2	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0035	3087	3	0	0	3	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0036	3087	2	0	2	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0037	3087	2	0	0	2	0	0	copy fasta	KIF17	chr1	20659014	20723007