JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF17_chr1_20659014_20723007	0/0	c0138	3087	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0139	3087	1	0	0	1	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0140	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0141	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0142	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0143	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0144	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0145	3087	1	0	0	0	0	1	copy fasta	KIF17	chr1	20659014	20723007
KIF17_chr1_20659014_20723007	0/0	c0146	3087	1	1	0	0	0	0	copy fasta	KIF17	chr1	20659014	20723007
KIF18A_chr11_28015619_28113156	1/1	c0001	2697	177	29	30	89	3	24	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0002	2697	70	37	6	21	1	5	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0003	2697	49	10	2	28	0	9	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0004	2697	25	0	0	25	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0005	2697	7	0	0	7	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0006	2697	3	3	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0007	2697	3	0	0	3	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0008	2697	2	2	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0009	2697	1	0	1	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0010	2697	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0011	2697	1	1	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0012	2697	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0013	2697	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0014	2697	1	1	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0015	2697	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0016	2697	1	0	1	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0017	2697	1	0	0	1	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18A_chr11_28015619_28113156	0/0	c0018	2697	1	1	0	0	0	0	copy fasta	KIF18A	chr11	28015619	28113156
KIF18B_chr17_44919711_44952773	1/0	c0001	2559	258	31	33	156	13	24	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0002	2559	44	25	7	5	1	6	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0003	2559	33	12	8	8	0	5	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0004	2559	20	3	8	4	1	4	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0005	2559	12	12	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0006	2559	7	0	4	3	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0007	2559	5	0	2	0	0	3	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0008	2559	3	3	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0009	2559	3	0	0	3	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0010	2559	3	0	0	3	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0011	2559	2	0	0	2	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0012	2559	2	0	1	0	0	1	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0013	2559	2	0	1	0	0	1	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0014	2559	1	0	1	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0015	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0016	2559	1	0	0	0	1	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0017	2559	1	0	0	1	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0019	2559	1	0	0	1	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0020	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0021	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/1	c0022	2559	1	0	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0023	2559	1	0	1	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773