JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF18B_chr17_44919711_44952773	0/0	c0024	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF18B_chr17_44919711_44952773	0/0	c0025	2559	1	1	0	0	0	0	copy fasta	KIF18B	chr17	44919711	44952773
KIF19_chr17_74321226_74360820	0/0	c0001	2997	112	4	25	61	6	16	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	1/0	c0002	2997	64	8	2	47	2	4	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0003	2997	42	5	3	32	1	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0004	2997	32	1	10	12	1	8	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/1	c0005	2997	25	3	6	6	3	6	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0006	2997	17	13	3	0	1	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0007	2997	14	13	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0008	2997	13	12	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0009	2997	10	1	7	0	1	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0010	2997	6	0	0	6	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0011	2997	5	5	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0012	2997	4	3	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0013	2997	3	3	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0014	2997	3	3	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0015	2997	3	0	1	0	1	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0016	2997	3	0	0	1	0	2	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0017	2997	3	3	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0018	2997	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0019	2997	2	0	2	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0020	2997	2	0	0	0	0	2	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0021	2997	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0022	2997	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0023	2997	2	0	1	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0024	2997	2	2	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0025	2997	2	0	0	2	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0026	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0027	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0028	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0029	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0030	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0031	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0032	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0033	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0034	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0035	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0036	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0037	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0038	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0039	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0040	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0041	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0042	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0043	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0044	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0045	2997	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0046	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0047	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0048	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820