JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMBRA1_chr11_46391414_46599023	0/0	c0005	3897	2	1	1	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0006	3897	1	0	0	0	0	1	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0007	3897	1	0	0	0	0	1	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0008	3897	1	0	1	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0009	3897	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0010	3897	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0011	3897	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	c0012	3897	1	0	0	1	0	0	copy fasta	AMBRA1	chr11	46391414	46599023
AMD1_chr6_110869785_110900713	1/1	c0001	1005	393	76	64	189	14	48	copy fasta	AMD1	chr6	110869785	110900713
AMD1_chr6_110869785_110900713	0/0	c0002	1005	1	0	0	1	0	0	copy fasta	AMD1	chr6	110869785	110900713
AMDHD1_chr12_95938331_95973720	0/0	c0001	1281	203	52	32	98	6	15	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/1	c0002	1281	96	1	12	67	5	10	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	1/0	c0003	1281	90	36	23	9	6	15	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0004	1281	3	1	1	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0005	1281	2	0	0	0	1	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0006	1281	2	2	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0008	1281	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0010	1281	1	1	0	0	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0012	1281	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0013	1281	1	0	0	1	0	0	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD1_chr12_95938331_95973720	0/0	c0014	1281	1	0	0	0	0	1	copy fasta	AMDHD1	chr12	95938331	95973720
AMDHD2_chr16_2515371_2536417	1/1	c0001	1230	299	75	64	119	5	34	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	c0002	1230	11	11	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	c0003	1230	5	0	0	5	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	c0004	1230	2	2	0	0	0	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMDHD2_chr16_2515371_2536417	0/0	c0005	1230	1	0	0	0	1	0	copy fasta	AMDHD2	chr16	2515371	2536417
AMELX_chrX_11288413_11305761	1/1	c0001	576	257	53	49	119	8	26	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	c0002	576	38	24	5	3	3	3	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	c0003	576	3	3	0	0	0	0	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	c0004	580	1	0	0	1	0	0	copy fasta	AMELX	chrX	11288413	11305761
AMELX_chrX_11288413_11305761	0/0	c0005	576	1	0	0	1	0	0	copy fasta	AMELX	chrX	11288413	11305761
AMELY_chrY_6860918_6916752	1/1	c0001	579	122	18	19	62	5	16	copy fasta	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	c0002	579	8	0	0	8	0	0	copy fasta	AMELY	chrY	6860918	6916752
AMELY_chrY_6860918_6916752	0/0	c0003	579	1	0	1	0	0	0	copy fasta	AMELY	chrY	6860918	6916752
AMER1_chrX_64180117_64210708	1/1	c0001	3408	150	5	32	80	9	22	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0002	3408	36	32	3	0	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0003	3408	31	22	8	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0004	3408	8	0	0	8	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0005	3408	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0006	3408	2	2	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0007	3408	2	0	0	2	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0008	3408	2	1	0	0	0	1	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0009	3396	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0010	3408	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0011	3408	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0012	3408	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0013	3408	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708