JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF19_chr17_74321226_74360820	0/0	c0049	2997	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0050	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0051	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0052	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0053	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0054	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0055	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0056	2997	1	0	1	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0057	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0058	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0059	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0060	2997	1	0	0	1	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0061	2997	1	1	0	0	0	0	copy fasta	KIF19	chr17	74321226	74360820
KIF19_chr17_74321226_74360820	0/0	c0062	2997	1	0	0	0	0	1	copy fasta	KIF19	chr17	74321226	74360820
KIF1A_chr2_240708767_240825219	0/0	c0001	5373	76	21	7	38	4	6	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	1/0	c0002	5376	76	4	22	27	7	15	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0003	5373	34	1	4	29	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0004	5373	30	8	6	9	3	4	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0005	5373	13	12	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0006	5373	11	1	5	1	1	3	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0007	5373	7	2	0	5	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0008	5373	5	5	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0009	5379	4	4	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0010	5376	4	2	1	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0011	5373	4	4	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0012	5373	4	1	3	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0013	5376	4	0	1	3	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0014	5376	4	1	0	1	0	2	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0015	5373	4	4	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/1	c0016	5370	3	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0017	5373	3	2	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0018	5373	2	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0019	5373	2	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0020	5373	2	0	0	0	0	2	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0021	5376	2	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0022	5373	2	0	2	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0023	5373	2	2	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0024	5373	2	0	2	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0025	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0026	5376	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0027	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0028	5373	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0029	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0030	5376	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0031	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0032	5373	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0033	5373	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0034	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0035	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0036	5379	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219