JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF1A_chr2_240708767_240825219	0/0	c0037	5379	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0038	5379	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0039	5376	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0040	5376	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0041	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0042	5373	1	0	0	0	1	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0043	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0044	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0045	5373	1	0	0	0	0	1	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0046	5373	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0047	5376	1	0	1	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0048	5373	1	0	0	1	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0049	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0050	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0051	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0052	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0053	5373	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1A_chr2_240708767_240825219	0/0	c0054	5376	1	1	0	0	0	0	copy fasta	KIF1A	chr2	240708767	240825219
KIF1B_chr1_10205570_10386603	1/0	c0001	5451	155	65	32	38	5	14	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0002	5451	74	8	17	37	2	10	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0003	5451	27	6	7	13	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/1	c0004	5451	20	0	4	4	3	8	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0005	5451	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0006	5451	3	3	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0007	5451	3	0	0	3	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0008	5451	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0009	5451	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0010	5451	1	0	0	0	0	1	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0011	5451	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0012	5451	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0013	5451	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0014	5451	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0015	5451	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0016	5451	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0017	5451	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0018	5451	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0019	5451	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0020	5451	1	0	0	1	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0021	5451	1	1	0	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1B_chr1_10205570_10386603	0/0	c0022	5451	1	0	1	0	0	0	copy fasta	KIF1B	chr1	10205570	10386603
KIF1C_chr17_4992950_5033401	0/1	c0001	3312	206	44	44	85	8	24	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	1/0	c0002	3312	81	16	18	40	2	4	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0003	3312	19	1	2	14	1	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0004	3312	12	12	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0005	3312	12	12	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0006	3312	6	2	0	4	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0007	3312	4	0	0	4	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0008	3312	3	0	2	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0009	3312	3	0	2	0	1	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0010	3312	2	0	2	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401