JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF1C_chr17_4992950_5033401	0/0	c0011	3312	2	2	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0012	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0013	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0014	3312	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0015	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0016	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0017	3312	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0018	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0019	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0020	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0021	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0022	3312	1	0	1	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0023	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0024	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0025	3312	1	0	0	0	0	1	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0026	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0027	3312	1	0	0	1	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0028	3312	1	0	1	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF1C_chr17_4992950_5033401	0/0	c0029	3312	1	1	0	0	0	0	copy fasta	KIF1C	chr17	4992950	5033401
KIF20A_chr5_138174112_138192723	1/1	c0001	2673	382	88	76	162	14	40	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0002	2673	7	0	3	0	1	3	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0003	2673	3	0	3	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0004	2673	2	0	0	2	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0005	2673	2	0	0	2	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0006	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0007	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0008	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0009	2673	1	0	0	0	0	1	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0010	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0011	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0012	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0013	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0014	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0015	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0016	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0017	2673	1	0	0	1	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0018	2673	1	0	0	0	1	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20A_chr5_138174112_138192723	0/0	c0019	2673	1	1	0	0	0	0	copy fasta	KIF20A	chr5	138174112	138192723
KIF20B_chr10_89696590_89779934	0/0	c0001	5469	115	17	14	52	4	28	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0002	5463	69	2	12	48	1	6	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0003	5463	48	0	9	39	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	1/0	c0004	5463	42	15	12	7	6	1	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0005	5463	22	1	11	0	4	6	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0006	5463	15	7	4	1	0	3	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0007	5469	13	12	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0008	5463	9	8	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0009	5463	8	7	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0010	5466	8	8	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0011	5463	3	3	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0012	5463	3	0	3	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934