JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF20B_chr10_89696590_89779934	0/0	c0013	5463	2	2	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0014	5463	2	1	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0015	5469	2	2	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/1	c0016	5463	2	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0017	5463	1	0	0	0	0	1	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0018	5463	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0019	5463	1	0	0	0	1	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0020	5463	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0021	5469	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0022	5469	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0023	5469	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0024	5469	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0025	5469	1	0	0	0	0	1	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0026	5469	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0027	5469	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0028	5463	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0029	5463	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0030	5463	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0031	5463	1	1	0	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0032	5463	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0033	5463	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0034	5463	1	0	0	1	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF20B_chr10_89696590_89779934	0/0	c0035	5463	1	0	1	0	0	0	copy fasta	KIF20B	chr10	89696590	89779934
KIF21A_chr12_39288228_39448120	1/1	c0001	5025	211	65	40	71	7	26	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0002	5025	23	4	3	12	1	3	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0003	5025	23	0	2	19	0	2	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0004	5025	8	0	0	7	0	1	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0005	5025	6	0	0	5	0	1	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0006	5025	5	0	0	4	0	1	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0007	5025	4	0	0	4	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0008	5025	4	4	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0009	5025	2	2	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0010	5025	2	0	0	0	0	2	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0011	5025	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0012	5025	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0013	5025	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0014	5025	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0015	5025	1	0	1	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0016	5025	1	0	1	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0017	5025	1	0	1	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0018	5025	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0019	5025	1	0	0	1	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21A_chr12_39288228_39448120	0/0	c0020	5025	1	1	0	0	0	0	copy fasta	KIF21A	chr12	39288228	39448120
KIF21B_chr1_200964390_201028714	1/1	c0001	4872	183	30	35	78	12	26	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0002	4872	67	9	16	34	2	6	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0003	4872	34	8	3	21	0	2	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0004	4872	20	20	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0005	4872	13	12	1	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0006	4872	3	2	1	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0007	4872	3	3	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714