JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF21B_chr1_200964390_201028714	0/0	c0008	4872	2	0	0	2	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0009	4872	2	0	1	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0010	4872	2	2	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0011	4872	2	0	1	0	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0012	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0013	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0014	4872	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0015	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0016	4872	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0017	4872	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0018	4872	1	0	0	0	0	1	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0019	4872	1	0	0	1	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0020	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0021	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF21B_chr1_200964390_201028714	0/0	c0022	4872	1	1	0	0	0	0	copy fasta	KIF21B	chr1	200964390	201028714
KIF22_chr16_29785751_29810384	0/1	c0001	1998	158	33	44	51	14	15	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	1/0	c0002	1998	26	12	1	12	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0003	1998	11	11	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0004	1998	2	2	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0005	1998	1	1	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0006	1998	1	0	0	0	0	1	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0007	1998	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0008	1998	1	0	1	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0009	1998	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0010	1998	1	1	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0011	1998	1	1	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0012	1998	1	0	0	1	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF22_chr16_29785751_29810384	0/0	c0013	1998	1	1	0	0	0	0	copy fasta	KIF22	chr16	29785751	29810384
KIF23_chr15_69409349_69453425	0/1	c0001	2925	148	30	27	76	5	9	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0002	2925	82	27	7	46	0	2	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	1/0	c0003	2925	46	12	2	30	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0004	2925	29	8	1	15	3	2	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0005	2925	4	4	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0006	2925	4	3	1	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0007	2925	2	2	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0008	2925	2	0	0	2	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0009	2925	2	0	2	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0010	2925	1	0	0	1	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0011	2925	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0012	2925	1	0	0	1	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0013	2925	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0014	2925	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0015	2925	1	0	0	0	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0016	2925	1	1	0	0	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0017	2925	1	0	0	1	0	0	copy fasta	KIF23	chr15	69409349	69453425
KIF23_chr15_69409349_69453425	0/0	c0018	2925	1	0	0	0	0	1	copy fasta	KIF23	chr15	69409349	69453425
KIF24_chr9_34247380_34334268	0/0	c0001	4107	94	20	9	54	2	9	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/1	c0002	4107	55	2	9	31	2	10	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0003	4107	51	0	3	46	0	2	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	1/0	c0004	4107	37	24	2	9	0	1	copy fasta	KIF24	chr9	34247380	34334268