JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF24_chr9_34247380_34334268	0/0	c0005	4107	23	5	11	3	1	3	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0006	4107	19	1	6	7	2	3	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0007	4107	18	1	11	0	2	4	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0008	4107	18	1	9	0	5	3	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0009	4107	14	0	0	13	1	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0010	4107	10	0	9	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0011	4107	8	7	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0012	4107	5	5	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0013	4107	5	0	0	5	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0014	4107	4	0	0	4	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0015	4107	3	3	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0016	4107	3	3	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0017	4107	3	3	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0018	4107	2	2	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0019	4107	2	0	0	2	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0020	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0021	4107	1	0	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0022	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0023	4107	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0024	4107	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0025	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0026	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0027	4107	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0028	4107	1	0	0	1	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0029	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0030	4107	1	0	0	0	1	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0031	4107	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0032	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0033	4107	1	0	1	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0034	4107	1	1	0	0	0	0	copy fasta	KIF24	chr9	34247380	34334268
KIF24_chr9_34247380_34334268	0/0	c0035	4107	1	0	0	0	0	1	copy fasta	KIF24	chr9	34247380	34334268
KIF25_chr6_167992671_168050091	1/0	c0001	1155	204	47	55	67	13	21	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0002	1155	52	1	4	38	1	8	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0003	1155	38	6	7	24	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0004	1155	35	3	6	21	0	5	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0005	1155	8	8	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0006	1155	6	1	1	0	3	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0007	1155	4	4	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0008	1155	3	2	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0009	1155	3	3	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0010	1155	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0011	1155	2	0	0	0	0	2	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0012	1155	2	1	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0013	1155	2	2	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0014	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0015	1155	1	0	0	0	1	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0016	1155	1	0	0	0	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0017	1155	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0018	1155	1	0	0	0	0	1	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0019	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091