JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF25_chr6_167992671_168050091	0/0	c0020	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0021	1155	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0022	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0023	1155	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0024	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0025	1155	1	0	0	1	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0026	1155	1	1	0	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF25_chr6_167992671_168050091	0/0	c0027	1154	1	0	1	0	0	0	copy fasta	KIF25	chr6	167992671	168050091
KIF26A_chr14_104133587_104185894	0/0	c0001	5649	67	2	24	34	3	4	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0002	5649	64	20	11	20	4	9	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	1/0	c0003	5649	45	5	11	20	3	5	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0004	5649	18	5	5	4	1	3	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0005	5649	10	1	0	8	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0006	5649	8	0	2	3	1	2	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0007	5649	7	0	2	5	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0008	5649	6	2	1	1	0	2	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0009	5649	5	5	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0010	5649	5	5	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0011	5649	5	0	0	0	0	5	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0012	5649	5	5	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0013	5650	4	0	1	3	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/1	c0014	5649	4	0	0	2	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0015	5649	4	4	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0016	5649	4	3	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0017	5649	3	3	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0018	5649	3	0	1	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0019	5650	3	0	1	1	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0020	5649	3	0	3	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0021	5649	2	2	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0022	5649	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0023	5650	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0024	5649	2	0	0	0	1	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0025	5649	2	0	1	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0026	5649	2	0	0	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0027	5649	2	2	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0028	5650	2	0	0	2	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0029	5649	2	0	1	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0030	5649	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0031	5649	2	1	0	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0032	5649	2	0	2	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0033	5649	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0034	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0035	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0036	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0037	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0038	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0039	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0040	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0041	5649	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0042	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894