JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF26A_chr14_104133587_104185894	0/0	c0093	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0094	5650	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0095	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0096	5649	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0097	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0098	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0099	5649	1	0	0	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0100	5649	1	0	0	1	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0101	5650	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0102	5649	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0103	5649	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0104	5650	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0105	5649	1	0	0	0	1	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0106	5649	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0107	5649	1	0	1	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0108	5649	1	1	0	0	0	0	copy fasta	KIF26A	chr14	104133587	104185894
KIF26A_chr14_104133587_104185894	0/0	c0109	5649	1	0	0	0	0	1	copy fasta	KIF26A	chr14	104133587	104185894
KIF26B_chr1_245149985_245714432	0/0	c0001	6327	30	13	5	8	0	4	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0002	6327	28	9	11	5	1	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0003	6327	9	8	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0004	6327	8	7	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0005	6327	6	0	3	1	0	2	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0006	6327	5	0	0	5	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0007	6327	4	4	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0008	6327	3	3	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0009	6327	3	3	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0010	6327	3	0	2	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0011	6327	3	3	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0012	6327	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0013	6327	2	1	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0014	6327	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0015	6327	2	0	1	0	1	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0016	6327	2	2	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0017	6327	2	1	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0018	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0019	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0020	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0021	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0022	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0023	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0024	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0025	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0026	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0027	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0028	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0029	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0030	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0031	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0032	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0033	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432