JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF26B_chr1_245149985_245714432	0/0	c0034	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0035	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0036	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0037	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0038	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0039	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0040	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0041	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0042	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0043	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0044	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0045	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0046	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0047	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0048	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0049	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0050	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0051	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0052	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0053	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0054	6327	1	0	0	0	0	1	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0055	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0056	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0057	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0058	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0059	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0060	6327	1	0	1	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0061	6327	1	1	0	0	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0062	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF26B_chr1_245149985_245714432	0/0	c0063	6327	1	0	0	1	0	0	copy fasta	KIF26B	chr1	245149985	245714432
KIF27_chr9_83829099_83926432	1/1	c0001	4206	111	16	17	61	4	11	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0002	4206	82	23	5	48	0	6	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0003	4206	50	15	1	23	5	6	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0004	4206	39	4	10	16	2	7	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0005	4206	32	10	13	0	3	6	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0006	4206	5	5	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0007	4206	4	4	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0008	4206	2	0	0	2	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0009	4206	2	1	1	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0010	4206	2	2	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0011	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0012	4206	1	0	0	0	1	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0013	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0014	4206	1	0	1	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0015	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0016	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0017	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0018	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0019	4206	1	0	0	0	1	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0020	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432