JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMER1_chrX_64180117_64210708	0/0	c0014	3408	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0015	3408	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0016	3408	1	0	0	1	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0017	3408	1	1	0	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER1_chrX_64180117_64210708	0/0	c0018	3408	1	0	1	0	0	0	copy fasta	AMER1	chrX	64180117	64210708
AMER2_chr13_25156679_25177288	1/1	c0001	2016	364	70	65	172	14	41	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0002	2016	33	15	6	11	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0003	2037	3	0	0	3	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0004	2037	2	2	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0005	2016	2	0	2	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0006	2016	2	2	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0007	2016	2	0	0	0	0	2	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0008	2030	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0009	2016	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0010	2016	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0011	2016	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0012	2016	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0013	2016	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0014	2016	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	c0015	2016	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER3_chr2_130750540_130773134	0/1	c0001	2586	241	52	43	97	13	35	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0002	2586	53	0	22	21	5	5	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0003	2586	15	0	0	14	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0004	2586	11	10	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0005	2586	8	0	0	8	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0006	2586	3	3	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0007	2586	3	0	0	3	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0008	2586	2	0	0	2	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0009	2586	2	0	2	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	1/0	c0010	2586	2	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0011	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0012	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0013	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0014	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0015	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0016	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0017	2586	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0018	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0019	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0020	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0021	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0022	2586	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0023	2586	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0024	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0025	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0026	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0027	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0028	2586	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0029	2586	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	c0030	2586	1	0	0	0	0	1	copy fasta	AMER3	chr2	130750540	130773134