JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF27_chr9_83829099_83926432	0/0	c0021	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0022	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0023	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0024	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0025	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0026	4206	1	1	0	0	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF27_chr9_83829099_83926432	0/0	c0027	4206	1	0	0	1	0	0	copy fasta	KIF27	chr9	83829099	83926432
KIF2A_chr5_62301206_62396025	1/1	c0001	2235	358	78	60	172	16	30	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0002	2235	5	5	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0003	2235	3	3	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0004	2235	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0005	2235	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0006	2235	1	1	0	0	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2A_chr5_62301206_62396025	0/0	c0007	2235	1	0	0	1	0	0	copy fasta	KIF2A	chr5	62301206	62396025
KIF2B_chr17_53817927_53830193	0/0	c0001	2022	175	13	23	120	6	13	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	1/0	c0002	2022	87	8	18	41	3	16	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/1	c0003	2022	86	5	29	38	5	8	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0004	2022	24	22	2	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0005	2022	20	14	3	0	3	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0006	2022	18	17	1	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0007	2022	7	7	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0008	2022	3	3	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0009	2022	1	0	0	0	0	1	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0010	2022	1	0	0	0	0	1	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0011	2022	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0012	2022	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0013	2022	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0014	2022	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0015	2022	1	1	0	0	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0016	2022	1	0	0	1	0	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0017	2022	1	0	0	0	1	0	copy fasta	KIF2B	chr17	53817927	53830193
KIF2B_chr17_53817927_53830193	0/0	c0018	2022	1	0	0	0	0	1	copy fasta	KIF2B	chr17	53817927	53830193
KIF2C_chr1_44734837_44772767	1/0	c0001	2178	222	42	44	94	12	29	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/1	c0002	2178	78	11	15	39	4	8	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0003	2178	27	25	2	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0004	2178	19	4	2	11	0	2	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0005	2178	9	0	0	9	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0006	2178	5	0	0	5	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0007	2178	3	3	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0008	2178	2	0	0	2	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0009	2178	2	0	0	2	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0010	2178	1	0	0	0	0	1	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0011	2178	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0012	2178	1	0	1	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0014	2178	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0015	2178	1	0	0	1	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF2C_chr1_44734837_44772767	0/0	c0016	2178	1	1	0	0	0	0	copy fasta	KIF2C	chr1	44734837	44772767
KIF3A_chr5_132687631_132742546	0/0	c0001	2181	189	54	22	108	3	2	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	1/1	c0002	2181	154	38	38	45	9	22	copy fasta	KIF3A	chr5	132687631	132742546