JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF3A_chr5_132687631_132742546	0/0	c0003	2181	2	0	0	2	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3A_chr5_132687631_132742546	0/0	c0004	2181	1	0	0	1	0	0	copy fasta	KIF3A	chr5	132687631	132742546
KIF3B_chr20_32272651_32340011	1/1	c0001	2244	171	36	40	51	11	31	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	c0002	2244	61	11	14	32	1	3	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	c0003	2244	7	7	0	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	c0004	2244	1	0	0	1	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	c0005	2244	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3B_chr20_32272651_32340011	0/0	c0006	2244	1	0	1	0	0	0	copy fasta	KIF3B	chr20	32272651	32340011
KIF3C_chr2_25921598_25987497	1/0	c0001	2382	100	8	32	38	2	19	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/1	c0002	2382	87	46	24	4	1	11	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0003	2382	29	15	8	0	3	3	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0004	2382	5	3	0	0	0	2	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0005	2382	3	0	0	0	0	3	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0006	2382	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0007	2382	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0008	2382	2	2	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0009	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0010	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0011	2382	1	0	0	0	1	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0012	2382	1	0	0	0	1	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0013	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0014	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0015	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0016	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0017	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF3C_chr2_25921598_25987497	0/0	c0018	2382	1	1	0	0	0	0	copy fasta	KIF3C	chr2	25921598	25987497
KIF4A_chrX_70285104_70425886	0/1	c0001	3699	151	24	42	58	9	17	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0002	3699	34	4	0	27	0	3	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0003	3699	25	3	1	14	0	7	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0004	3699	23	19	3	0	0	1	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0005	3699	11	0	0	11	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0006	3699	6	6	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	1/0	c0007	3699	2	0	1	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0008	3699	2	2	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0009	3699	1	0	0	1	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0010	3699	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0011	3699	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0012	3699	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4A_chrX_70285104_70425886	0/0	c0013	3699	1	1	0	0	0	0	copy fasta	KIF4A	chrX	70285104	70425886
KIF4B_chr5_155008755_155023141	0/0	c0001	3705	139	51	26	32	10	20	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	1/1	c0002	3705	134	8	25	84	6	9	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0003	3705	42	0	4	31	2	5	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0004	3705	21	17	4	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0005	3705	17	0	0	17	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0006	3705	11	4	1	6	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0007	3705	10	7	2	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0008	3705	10	0	7	2	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0009	3705	5	4	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0010	3705	4	4	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0011	3705	4	0	0	4	0	0	copy fasta	KIF4B	chr5	155008755	155023141