JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF4B_chr5_155008755_155023141	0/0	c0012	3705	2	0	0	2	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0013	3705	2	0	0	0	0	2	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0014	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0015	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0016	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0017	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0018	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0019	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0020	3721	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0021	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0022	3705	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0023	3705	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0024	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0025	3705	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0026	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0027	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0028	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0029	3705	1	0	0	1	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0030	3731	1	1	0	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0031	3705	1	0	0	0	0	1	copy fasta	KIF4B	chr5	155008755	155023141
KIF4B_chr5_155008755_155023141	0/0	c0032	3705	1	0	1	0	0	0	copy fasta	KIF4B	chr5	155008755	155023141
KIF5A_chr12_57545044_57591633	1/1	c0001	3099	332	88	65	131	14	32	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0002	3099	20	0	0	19	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0003	3099	3	0	0	3	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0004	3099	1	0	0	0	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0005	3099	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0006	3099	1	0	0	0	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0007	3099	1	0	1	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0008	3099	1	0	0	1	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0009	3099	1	0	0	0	0	1	copy fasta	KIF5A	chr12	57545044	57591633
KIF5A_chr12_57545044_57591633	0/0	c0010	3099	1	1	0	0	0	0	copy fasta	KIF5A	chr12	57545044	57591633
KIF5B_chr10_32004015_32061425	1/1	c0001	2892	352	91	66	144	14	35	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0002	2892	3	1	0	1	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0003	2892	3	3	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0004	2892	2	0	0	2	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0005	2892	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0006	2892	1	0	0	1	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0007	2892	1	1	0	0	0	0	copy fasta	KIF5B	chr10	32004015	32061425
KIF5B_chr10_32004015_32061425	0/0	c0008	2892	1	0	0	0	0	1	copy fasta	KIF5B	chr10	32004015	32061425
KIF5C_chr2_148870227_149031759	1/1	c0001	2874	123	47	14	48	1	11	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0002	2874	34	24	3	3	1	3	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0003	2874	8	8	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0004	2874	7	0	1	4	0	2	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0005	2874	2	0	0	2	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0006	2874	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0007	2874	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0008	2874	1	1	0	0	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF5C_chr2_148870227_149031759	0/0	c0009	2874	1	0	0	1	0	0	copy fasta	KIF5C	chr2	148870227	149031759
KIF6_chr6_39324990_39730408	0/1	c0001	2445	74	46	8	12	1	6	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	1/0	c0002	2445	37	6	10	13	2	5	copy fasta	KIF6	chr6	39324990	39730408