JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF6_chr6_39324990_39730408	0/0	c0003	2445	24	5	0	14	0	5	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0004	2445	8	0	5	0	2	1	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0005	2445	7	0	3	0	1	3	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0006	2445	7	0	0	6	0	1	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0007	2445	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0008	2445	3	3	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0009	2445	2	2	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0010	2445	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0011	2445	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0012	2445	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0013	2445	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0014	2445	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0015	2445	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0016	2445	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0017	2445	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	c0018	2445	1	0	0	0	0	1	copy fasta	KIF6	chr6	39324990	39730408
KIF7_chr15_89622977_89660467	0/1	c0001	4032	116	24	24	44	9	14	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0002	4032	83	2	16	49	3	13	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	1/0	c0003	4032	64	3	11	39	3	7	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0004	4032	24	11	6	4	1	2	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0005	4032	20	17	1	2	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0006	4032	8	0	0	8	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0007	4032	6	6	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0008	4032	5	0	3	0	1	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0009	4032	4	4	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0010	4032	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0011	4032	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0012	4032	3	1	2	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0013	4032	3	3	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0014	4032	3	3	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0015	4032	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0016	4032	3	3	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0017	4032	3	0	0	3	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0018	4032	2	0	0	2	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0019	4032	2	0	0	0	0	2	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0020	4032	2	2	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0021	4032	2	1	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0022	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0023	4032	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0024	4032	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0025	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0026	4032	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0027	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0028	4032	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0029	4032	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0030	4032	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0031	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0032	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0033	4032	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0034	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467