JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIF7_chr15_89622977_89660467	0/0	c0035	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0036	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0037	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0038	4032	1	0	0	0	1	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0039	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0040	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0041	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0042	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0043	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0044	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0045	4032	1	0	0	0	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0046	4032	1	0	1	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0047	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0048	4032	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	c0049	4032	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF9_chr3_47222998_47287799	0/1	c0001	2373	160	44	36	55	4	20	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	1/0	c0002	2373	132	39	22	47	5	18	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0003	2373	26	2	5	17	1	1	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0004	2373	4	0	0	4	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0005	2373	3	0	1	2	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0006	2373	2	0	0	2	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0007	2373	1	0	0	1	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0010	2373	1	0	0	0	0	1	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0011	2373	1	0	1	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0012	2373	1	0	1	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	c0013	2373	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIFAP3_chr1_169916329_170079695	1/1	c0001	2379	268	82	42	98	8	36	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	c0002	2379	95	4	16	62	4	9	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	c0003	2379	5	5	0	0	0	0	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	c0004	2379	2	0	0	2	0	0	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	c0005	2379	1	1	0	0	0	0	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	c0006	2379	1	0	0	0	0	1	copy fasta	KIFAP3	chr1	169916329	170079695
KIFBP_chr10_68983803_69021982	1/0	c0001	1866	246	43	39	122	6	35	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/1	c0002	1866	122	27	20	55	6	13	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0003	1866	23	20	3	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0004	1866	5	1	3	0	1	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0005	1866	5	0	0	5	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0006	1866	2	2	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0007	1866	2	2	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0008	1866	1	1	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0009	1866	1	0	1	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	c0010	1866	1	0	0	0	1	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFC1_chr6_33386823_33414896	0/1	c0001	2022	323	87	67	131	10	27	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0002	2022	5	0	1	1	0	3	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0003	2022	3	1	1	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0004	2022	3	3	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0005	2022	3	2	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0006	2022	2	0	0	2	0	0	copy fasta	KIFC1	chr6	33386823	33414896