JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIFC1_chr6_33386823_33414896	0/0	c0007	2022	2	0	2	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0008	2022	2	2	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0009	2022	1	0	0	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0010	2022	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0011	2022	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	c0012	2022	1	0	1	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC2_chr8_144461337_144479202	0/0	c0001	2376	304	75	63	117	11	38	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	1/0	c0002	2376	48	0	5	42	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0003	2376	9	9	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0004	2376	4	4	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0005	2376	4	0	0	4	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0006	2376	4	0	3	0	1	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0007	2376	4	0	0	4	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0008	2376	3	0	0	3	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0009	2376	2	0	0	2	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0010	2376	2	0	2	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0011	2376	2	2	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0012	2376	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0013	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0014	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0015	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0016	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0017	2376	1	0	0	0	0	1	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0018	2376	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0019	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0020	2376	1	0	0	0	0	1	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0021	2376	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0022	2376	1	0	1	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0023	2376	1	0	1	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0024	2376	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/1	c0025	2376	1	0	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0026	2376	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	c0027	2376	1	0	1	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC3_chr16_57753217_57807491	1/0	c0001	2481	161	48	24	81	1	6	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0002	2481	149	16	35	69	8	21	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0003	2481	60	13	8	23	4	12	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0004	2472	4	4	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0005	2481	4	4	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/1	c0006	2481	4	0	0	0	3	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0007	2481	4	4	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0008	2481	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0009	2481	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0010	2481	1	0	1	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0011	2481	1	0	0	0	0	1	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0012	2481	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	c0013	2481	1	1	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIN_chr10_7745962_7792993	1/1	c0001	1182	406	66	67	218	16	37	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	c0002	1182	16	15	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	c0003	1182	2	0	0	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	c0004	1182	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993