JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIN_chr10_7745962_7792993	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIR2DL1_chr19_54764793_54789322	0/1	c0001	1047	223	40	29	125	4	24	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0002	1047	40	2	5	26	2	5	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0003	1047	29	11	4	5	2	7	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0004	1047	8	7	1	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0005	1047	8	6	1	0	1	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0006	1047	4	4	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0007	1047	3	3	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0008	1047	3	0	0	3	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0009	1047	2	1	0	0	0	1	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0010	1047	2	0	1	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0011	1047	2	0	0	2	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0012	1047	2	2	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0013	1047	2	2	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0014	230	1	0	0	0	1	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0015	1047	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0016	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0017	1047	1	0	0	0	0	1	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0018	1047	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0019	1047	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0020	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0021	1047	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0022	1047	1	0	1	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0023	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0024	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0025	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0026	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0027	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	c0028	1047	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL3_chr19_54733513_54758052	0/0	c0001	1026	215	21	26	146	6	16	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0002	1026	33	2	5	20	1	5	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0003	1026	16	14	1	0	0	1	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0004	1026	6	6	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0005	1026	5	0	0	5	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0006	1023	4	4	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0007	1026	4	0	1	3	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0008	1026	4	4	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0009	1026	3	0	0	3	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0010	1023	2	0	0	2	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0011	1026	2	0	0	2	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0012	1026	2	2	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0013	1026	2	2	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0014	1026	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0015	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0016	1023	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0017	1026	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0018	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0019	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0020	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0021	1026	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052